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#   The TOOLS/*.pl file conversion will ensure that pod2usage() operates
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#   The TOOLS/*.pl file conversion will ensure that pod2usage() operates
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#
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#
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for file in ./TOOLS/armerge ./BIN.*/links.sh $( find ./TOOLS -name *.pl ); do
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for file in ./TOOLS/armerge ./BIN.*/links.sh $( find ./TOOLS -name *.pl ); do
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    chmod +w $file
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    chmod +w $file
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    dos2unix -ascii $file $file 2>/dev/null
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    dos2unix -ascii $file $file 2>/dev/null
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    chmod -w $file
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    chmod -w $file 2>/dev/null
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done
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done
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#
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#
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#   Make executables executable
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#   Make executables executable
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#
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#
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chmod -fR a+x ./TOOLS
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chmod -fR a+x ./TOOLS 2>/dev/null
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chmod -fR a+x ./BIN.*
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chmod -fR a+x ./BIN.* 2>/dev/null
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#
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#
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#   Release links for all targets.
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#   Release links for all targets.
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#
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#
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for dir in ./BIN.*; do
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for dir in ./BIN.*; do
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    if [ -d $dir ] ; then
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    if [ -d $dir ] ; then
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        cd $dir
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        cd $dir
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	echo Processing links in $dir
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        echo Processing links in $dir
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        [ -f ./links.sh ] && sh ./links.sh
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        [ -f ./links.sh ] && sh ./links.sh
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        cd -
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        cd -
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    fi
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    fi
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done
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done
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echo "JATS setup complete"
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echo "JATS setup complete"
- 
 
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