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#! /bin/bash

########################################################################

#

#   JATS Post Installation Setup for SOLARIS/LINUX

#

#   This command is to be executed in the directory in which it is found

#

#   Note: This MUST be a UNIX format file, not a DOS formatted file

#

########################################################################

#

#

#   Sanity test

#

echo "JATS setup"

if [ ! -d ./TOOLS ] ; then

    echo "ERROR: TOOLS directory not found"

    exit 1

fi

#

#   Ensure some essential scripts are not in DOS format

#   The TOOLS/*.pl file conversion will ensure that pod2usage() operates

#

for file in ./TOOLS/armerge ./BIN.*/links.sh $( find ./TOOLS -name *.pl ); do

    chmod +w $file

    dos2unix -ascii $file $file 2>/dev/null

    chmod -w $file

done

#

#   Make executables executable

#

chmod -fR a+x ./TOOLS

chmod -fR a+x ./BIN.*

#

#   Release links for all targets.

#

for dir in ./BIN.*; do

    if [ -d $dir ] ; then

        cd $dir

	echo Processing links in $dir

        [ -f ./links.sh ] && sh ./links.sh

        cd -

    fi

done

echo "JATS setup complete"